Proteomics Bioinfotmatics Thumbnail (Logo)This course type is computational

Proteomics Bioinformatics

11 - 16 July 2021Wellcome Genome Campus, UK
Deadlines (at 23:59 UTC):
  • Application and bursary deadline 08 April 2021

Hands-on training in the basics of mass spectrometry, proteomics bioinformatics, and related methods and resources

  • Summary

    PLEASE NOTE: This course was cancelled in 2020 due to the Covid-19 pandemic. Applications for the 2020 course have been carried over to 2021. The course is now open to new applicants.

    We hope to resume our face-to-face courses in 2021. However, should the status of the pandemic not allow us to do this safely, the course may switch to a virtual format.

    Run jointly with EMBL-EBI, this popular course provides hands-on training in the basics of mass spectrometry (MS) and proteomics bioinformatics approaches, search engines and post-processing software, quantitative proteomics approaches and related statistical concepts, MS proteomics data repositories and public data re-use, how to employ existing databases for protein analysis, perform the annotation of subsequent protein lists and the incorporation of information from molecular interaction and pathway databases.

    The popular course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.

    The practical elements of the course will take raw data from a proteomics experiment and analyse it. Participants will be able to go from MS spectra to identifying and quantify peptides and finally to obtain lists of protein identifiers that can be analysed further using a wide range of resources. The final aim is to provide attendees with the practical bioinformatics knowledge they need to go back to the lab and process their own data when collected.

  • Programme

    The programme will include lecture and practical, computational sessions covering the following topics:

    • Mass Spectrometry Basics
    • Proteomics Bioinformatics Basics
    • Quantitative proteomics
    • Introduction to data independent acquisition approaches
    • Standardisation of proteomics data
    • MS proteomics repositories, including PRIDE and PRIDE-related tools and ProteomeXchange
    • Introduction to Proteogenomics
    • Protein interaction data through IntAct and IMEX resources
    • Functional analysis of proteins using Cytoscape and Reactome


    Learning Outcomes
    After completing the course, participants will be able to:

    • Use and understand bioinformatics tools to analyse shotgun proteomics data, involving identification and quantification approaches
    • Evaluate the strengths and weaknesses of several experimental and bioinformatics analysis approaches
    • Browse, search, submit, retrieve and re-use proteomics data from widely used public proteomics data repositories
    • Use tools to perform functional annotation of lists of proteins
  • Instructors and speakers

    Lead instructors

    Juan A. Vizcaíno

    Juan A. Vizcaíno

    Lennart Martens

    Lennart Martens
    Ghent University and VIB, Belgium

    The course will be taught by trainers from EMBL-EBI.

    Guest speakers

    Jyoti Choudhary

    Jyoti Choudhary
    The Institute of Cancer Research, UK

    Pedro Beltrao

    Pedro Beltrao

  • Cost and bursaries
    Cost Accommodation / meals
    *Course fee £750 This is a residential course and the fee includes all accommodation and meals.

    *The course fee is subsidised by Wellcome Genome Campus Advanced Courses and Scientific Conferences and applies to non-commercial applicants. Please contact us for the commercial fee.

    Limited bursaries are available (up to 50% reduction on the course fee) and are awarded on merit. If you would like to apply for a bursary, please complete the bursary section of the online application form.

    Where there are many bursary applications, the selection committee may issue smaller amounts.

    Bursaries can be applied for as part of the course application form. Applicants will be notified of a bursary award along with their place on the course, usually within one month of the application deadline. The decision of the selection committee is final.

    Please note that both the applicant and sponsor are required to provide a justification for the bursary as part of the application.

    Additional funding opportunities
    Visit our support page for additional financial support currently available.

    Accommodation services phishing scam – please be vigilant. More information.

  • How to apply

    Applicants should be research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.

    How to Apply
    Please click the Apply button above to begin the online application process. Places are limited and will be awarded on merit. If you have any problems with the online application process, please contact us.

    Please note: Applications must be supported by a recommendation from a scientific or clinical sponsor (e.g. supervisor, line manager or head of department). A request for a supporting statement will be sent to your nominated sponsor automatically during the application process. Applicants must ensure that their sponsor provides this supporting statement by the application deadline. Applications without a supporting statement cannot be considered.

    Travel visas
    Successful applicants will be provided with a support letter for their visa application, if required.

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